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Info • Trametes ljubarskyi CIRM1659 v1.0

Status

Jul 2014. Trametes ljubarskyi CIRM1659 v1.0 is a standard draft assembly produced with Illumina reads and and assembled with AllpathsLG.

Summary statistics for the Trametes ljubarskyi CIRM1659 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.00
Sequencing read coverage depth 86.3
# of contigs 761
# of scaffolds 311
# of scaffolds >= 2Kbp 257
Scaffold N50 29
Scaffold L50 (Mbp) 0.33
# of gaps 450
% of scaffold length in gaps 2.1%
Three largest Scaffolds (Mbp) 1.20, 1.11, 1.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 45479 43320 95.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1785 1526
transcript 1455 1231
exon 254 155
intron 72 59
description:
protein length (aa) 414 339
exons per gene 5.72 4
# of gene models 13180


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.