Info • Trametes maxima CIRM-BRFM 1813 v1.0

Status

[September 2017] The Trametes maxima CIRM-BRFM 1813 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trametes maxima CIRM-BRFM 1813 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.57
Sequencing read coverage depth 137.24x
# of contigs 53
# of scaffolds 53
# of scaffolds >= 2Kbp 53
Scaffold N50 8
Scaffold L50 (Mbp) 1.84
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.41, 2.18, 2.07


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 72609 71325 98.2%
Ests est.fasta 109649153 109444153 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1848 1584
transcript 1497 1279
exon 248 151
intron 72 60
description:
protein length (aa) 440 361
exons per gene 6.03 5
# of gene models 12468


Collaborators

Eric Record and Marie-Noëlle Rosso, Aix Marseille Université

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.