Info • Leiotrametes menziesii CIRM-BRFM 1781 v1.0

Status

[October 2017] The Leiotrametes menziesii CIRM-BRFM 1781 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trametes menziesii CIRM-BRFM 1781 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.22
Sequencing read coverage depth 106.45x
# of contigs 96
# of scaffolds 96
# of scaffolds >= 2Kbp 95
Scaffold N50 16
Scaffold L50 (Mbp) 0.66
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.97, 1.85, 1.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 110746 106990 96.6%
Ests est.fasta 180205726 177934228 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1872 1644
transcript 1518 1321
exon 250 150
intron 72 60
description:
protein length (aa) 445 369
exons per gene 6.08 5
# of gene models 12529


Collaborators

Eric Record and Marie-Noëlle Rosso, Aix Marseille Université

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.