Info • Trametes polyzona CIRM-BRFM 1798 v1.0

Status

[September 2017] The Trametes polyzona CIRM-BRFM 1798 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trametes polyzona v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.43
Sequencing read coverage depth 155.07x
# of contigs 33
# of scaffolds 33
# of scaffolds >= 2Kbp 33
Scaffold N50 6
Scaffold L50 (Mbp) 2.29
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.36, 3.20, 2.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 77402 76039 98.2%
Ests est.fasta 103306591 102952721 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1853 1599
transcript 1508 1298
exon 252 151
intron 71 60
description:
protein length (aa) 439 359
exons per gene 5.98 5
# of gene models 12346


Collaborators

Eric Record and Marie-Noëlle Rosso, Aix Marseille Université

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.