Info • Naematella encephela UCDFST 68-887.2 v1.0

Status

[Feb 2016] The Naematella enchepala genome was sequenced using PacBio reads and assembled with Falcon version 0.3.0 and polished with Quiver version smrtanalysis_2.3.0.140936.p5.
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Naematella enchepala v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.79
Sequencing read coverage depth 115.64x
# of contigs 151
# of scaffolds 151
# of scaffolds >= 2Kbp 150
Scaffold N50 27
Scaffold L50 (Mbp) 0.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.65, 1.32, 0.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51915 49389 95.1%
Ests est.fasta 104787662 101367882 96.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2045 1815
transcript 1658 1430
exon 256 159
intron 73 54
description:
protein length (aa) 479 399
exons per gene 6.46 6
# of gene models 7964


Collaborators

Jon Magnuson,Pacific Northwest National Laboratory, USA
Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.