Info • Trematosphaeria pertusa CBS 122368 v1.0

Status

[April 2014] The Karstenula rhodostoma genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trematosphaeria pertusa CBS 122368 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.75
Sequencing read coverage depth 96.4x
# of contigs 675
# of scaffolds 101
# of scaffolds >= 2Kbp 84
Scaffold N50 8
Scaffold L50 (Mbp) 2.10
# of gaps 574
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 5.01, 3.81, 3.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 29193 28927 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1643 1419
transcript 1504 1289
exon 553 359
intron 83 57
description:
protein length (aa) 428 352
exons per gene 2.72 2
# of gene models 17306


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.