Status
June 2013. The Trichaptum abietinum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R44008. The genome was subsequently annotated with the JGI annotation pipeline and custom analyses.
Summary statistics for the Trichaptum abietinum v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 40.61 |
| Sequencing read coverage depth | 125.6 |
| # of contigs | 1345 |
| # of scaffolds | 587 |
| # of scaffolds >= 2Kbp | 492 |
| Scaffold N50 | 63 |
| Scaffold L50 (Mbp) | 0.17 |
| # of gaps | 758 |
| % of scaffold length in gaps | 2.7% |
| Three largest Scaffolds (Mbp) | 1.17, 0.76, 0.66 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | EST_contigs | 42909 | 41916 | 97.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1700 | 1461 |
| transcript | 1373 | 1159 |
| exon | 243 | 147 |
| intron | 72 | 59 |
| description: | ||
| protein length (aa) | 401 | 333 |
| exons per gene | 5.65 | 4 |
| # of gene models | 14978 |
Collaborators
- Francis Martin - INRA Nancy, France
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
