Info • Trichaptum abietinum v1.0

Status

June 2013. The Trichaptum abietinum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R44008. The genome was subsequently annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Trichaptum abietinum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.61
Sequencing read coverage depth 125.6
# of contigs 1345
# of scaffolds 587
# of scaffolds >= 2Kbp 492
Scaffold N50 63
Scaffold L50 (Mbp) 0.17
# of gaps 758
% of scaffold length in gaps 2.7%
Three largest Scaffolds (Mbp) 1.17, 0.76, 0.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 42909 41916 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1700 1461
transcript 1373 1159
exon 243 147
intron 72 59
description:
protein length (aa) 401 333
exons per gene 5.65 4
# of gene models 14978


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.