Info • Trichoderma aggressivum TUCIM 2129 v1.0

Status

[November 2019] The Trichoderma aggressivum TUCIM 2129 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma aggressivum TUCIM 2129 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.20
Sequencing read coverage depth 150.03x
# of contigs 140
# of scaffolds 116
# of scaffolds >= 2Kbp 109
Scaffold N50 9
Scaffold L50 (Mbp) 1.53
# of gaps 24
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.86, 2.36, 2.33


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33803 32719 96.8%
Ests est.fasta 178797068 178195651 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1961 1692
transcript 1794 1538
exon 628 395
intron 92 68
description:
protein length (aa) 481 386
exons per gene 2.85 2
# of gene models 12489


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.