Info • Trichoderma alni TUCIM 2657 v1.0

Status

[January 2020] The Trichoderma alni TUCIM 2657 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma alni TUCIM 2657 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.85
Sequencing read coverage depth 92.39x
# of contigs 256
# of scaffolds 215
# of scaffolds >= 2Kbp 196
Scaffold N50 22
Scaffold L50 (Mbp) 0.65
# of gaps 41
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.23, 2.14, 1.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33503 32251 96.3%
Ests est.fasta 140078571 139274441 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1921 1657
transcript 1748 1503
exon 608 382
intron 94 68
description:
protein length (aa) 474 385
exons per gene 2.87 2
# of gene models 12485


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.