Info • Trichoderma asperellum CBS 433.97 v1.0

Status

v1.0: This draft assembly was produced using Illumina data (2x150 270bp, 2x100 4kb CLIP) and assembled
using the AllPathsLG assembler.

Summary statistics for the Trichoderma asperellum CBS 433.97 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.46
Sequencing read coverage depth 120x
# of contigs 456
# of scaffolds 419
# of scaffolds >= 2Kbp 262
Scaffold N50 10
Scaffold L50 (Mbp) 1.1
# of gaps 37
% of scaffold length in gaps 0.06%
Three largest Scaffolds (Mbp) 3.8, 3.3, 2.9


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNAseq 193396726 181306930 93.75%
Ests RNAseq_assembly 22534 21923 97.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1584 1384
transcript 1518 1230
exon 547 332
intron 94 68
description:
protein length (aa) 443 355
exons per gene 2.80 2
# of gene models 12586


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Druzhinina IS, Chenthamara K, Zhang J, Atanasova L, Yang D, Miao Y, Rahimi MJ, Grujic M, Cai F, Pourmehdi S, Salim KA, Pretzer C, Kopchinskiy AG, Henrissat B, Kuo A, Hundley H, Wang M, Aerts A, Salamov A, Lipzen A, LaButti K, Barry K, Grigoriev IV, Shen Q, Kubicek CP
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
PLoS Genet. 2018 Apr;14(4):e1007322. doi: 10.1371/journal.pgen.1007322

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.