Status
[March 2023] The genome sequence of Trichoderma aroviride SC1 was provided by Aleš Eichmeier and annotated using the JGI Annotation pipeline. The mitochondrial genome was also assembled and is available in the download section. The transcriptome data used to support the genome annotation was retrieved from Trichoderma atroviride P1 (Triatrov1)
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.60 |
| Sequencing read coverage depth | 50.5x |
| # of contigs | 211 |
| # of scaffolds | 211 |
| # of scaffolds >= 2Kbp | 196 |
| Scaffold N50 | 35 |
| Scaffold L50 (Mbp) | 0.31 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.04, 0.92, 0.86 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 36187 | 26659 | 73.7% |
| Ests | est.fasta | 133919558 | 127338816 | 95.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1878 | 1601 |
| transcript | 1701 | 1448 |
| exon | 566 | 333 |
| intron | 90 | 67 |
| description: | ||
| protein length (aa) | 491 | 406 |
| exons per gene | 3.01 | 3 |
| # of gene models | 11401 |
Collaborators
Ales-Eichmeier - Mendel University
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Trichoderma
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
