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Info • Trichoderma atroviride F7 v1.0

Status

[November 2018] The Trichoderma atroviride F7 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma atroviride F7 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.52
Sequencing read coverage depth 122.16x
# of contigs 29
# of scaffolds 29
# of scaffolds >= 2Kbp 28
Scaffold N50 6
Scaffold L50 (Mbp) 3.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.15, 3.88, 3.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39548 36106 91.3%
Ests est.fasta 211210022 209334782 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1846 1594
transcript 1682 1442
exon 596 371
intron 92 69
description:
protein length (aa) 476 390
exons per gene 2.82 2
# of gene models 12001


Collaborators

Mateo Lorito - Università di Napoli Federico II

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.