Info • Trichoderma atrobrunneum ITEM 908


The genome sequence and gene models of Trichoderma atrobrunneum ITEM 908 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 5, 2018 and the gff3 file provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Trichoderma atrobrunneum ITEM 908 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.15
Sequencing read coverage depth 60x
# of contigs 847
# of scaffolds 847
# of scaffolds >= 2Kbp 540
Scaffold N50 90
Scaffold L50 (Mbp) 0.13
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.55, 0.55, 0.52

Gene Models ExternalModels
length (bp) of: average median
gene 1782 1392
transcript 1442 1182
exon 457 250
intron 159 73
protein length (aa) 481 394
exons per gene 3.15 3
# of gene models 8637

Genome Reference(s)


This project was not sequenced at the JGI.