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Info • Trichoderma atroviride P1 v1.0

Status

[November 2018] The Trichoderma atroviride P1 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma atroviride P1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.13
Sequencing read coverage depth 127.9x
# of contigs 461
# of scaffolds 446
# of scaffolds >= 2Kbp 397
Scaffold N50 61
Scaffold L50 (Mbp) 0.20
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.62, 0.60, 0.58


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36187 33764 93.3%
Ests est.fasta 133919558 132193113 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1803 1549
transcript 1635 1398
exon 586 363
intron 96 69
description:
protein length (aa) 464 379
exons per gene 2.79 2
# of gene models 12360


Collaborators

Mateo Lorito - Università di Napoli Federico II

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.