Info • Trichoderma brevicompactum IBT40841

Status

The genome sequence and gene models of Trichoderma brevicompactum IBT40841 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Mar 29, 2019 and annotation provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Trichoderma brevicompactum IBT40841 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.04
Sequencing read coverage depth 50x
# of contigs 1457
# of scaffolds 1404
# of scaffolds >= 2Kbp 1164
Scaffold N50 184
Scaffold L50 (Mbp) 0.06
# of gaps 53
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.28, 0.27, 0.26


Gene Models ExternalModels
length (bp) of: average median
gene 1749 1426
transcript 1560 1260
exon 558 308
intron 104 69
description:
protein length (aa) 520 420
exons per gene 2.79 2
# of gene models 10406


Collaborators

Robert Proctor - US Department of Agriculture, Agriculture Research Service

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Proctor RH, McCormick SP, Kim HS, Cardoza RE, Stanley AM, Lindo L, Kelly A, Brown DW, Lee T, Vaughan MM, Alexander NJ, Busman M, Gutiérrez S
Evolution of structural diversity of trichothecenes, a family of toxins produced by plant pathogenic and entomopathogenic fungi.
PLoS Pathog. 2018 Apr;14(4):e1006946. doi: 10.1371/journal.ppat.1006946

Funding

This project was not sequenced at the JGI.