Info • Trichoderma cerinum TUCIM 2977 v1.0

Status

[November 2019] The Trichoderma cerinum TUCIM 2977 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma cerinum TUCIM 2977 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.19
Sequencing read coverage depth 90.95x
# of contigs 143
# of scaffolds 126
# of scaffolds >= 2Kbp 110
Scaffold N50 8
Scaffold L50 (Mbp) 2.09
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.49, 3.12, 2.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33794 32836 97.2%
Ests est.fasta 188537806 187703613 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1973 1716
transcript 1811 1568
exon 630 395
intron 88 67
description:
protein length (aa) 487 400
exons per gene 2.88 2
# of gene models 12801


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.