Info • Trichoderma sp. aff lixii SZMC 28015 v1.0

Status

[June 2021] The Trichoderma sp. aff lixii SZMC 28015 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 40.21
Sequencing read coverage depth 109.551664746x
# of contigs 220
# of scaffolds 209
# of scaffolds >= 2Kbp 160
Scaffold N50 7
Scaffold L50 (Mbp) 1.92
# of gaps 11
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.15, 4.07, 3.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45215 44830 99.1%
Ests est.fasta 161484647 160365338 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1964 1694
transcript 1803 1542
exon 633 397
intron 89 67
description:
protein length (aa) 481 390
exons per gene 2.85 2
# of gene models 13104


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.