Status
Assembly v1 (September 2012) is a draft assembly of Solexa gDNA reads using AllPathsLG.
Summary statistics for the Trichoderma citrinoviride v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 33.48 |
| Sequencing read coverage depth | 63.1x |
| # of contigs | 1331 |
| # of scaffolds | 613 |
| # of scaffolds >= 2Kbp | 241 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.84 |
| # of gaps | 718 |
| % of scaffold length in gaps | 0.9% |
| Three largest Scaffolds (Mbp) | 3.29, 2.90, 2.85 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_Combest_RNA_contigs | 66512 | 65424 | 98.4% |
| Other | JGI_Rnnotator_RNA_contigs | 28133 | 1034 | 3.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1729 | 1439 |
| transcript | 1498 | 1239 |
| exon | 477 | 249 |
| intron | 110 | 71 |
| description: | ||
| protein length (aa) | 489 | 403 |
| exons per gene | 3.14 | 3 |
| # of gene models | 9397 |
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
