Info • Trichoderma compactum CBS121218 v1.0

Status

[December 2021] The Trichoderma compactum CBS121218 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 36.58
Sequencing read coverage depth 269.16x
# of contigs 699
# of scaffolds 686
# of scaffolds >= 2Kbp 525
Scaffold N50 42
Scaffold L50 (Mbp) 0.24
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.35, 1.24, 0.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46390 45169 97.4%
Ests est.fasta 154059099 153194495 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1958 1700
transcript 1783 1528
exon 616 385
intron 94 68
description:
protein length (aa) 470 380
exons per gene 2.90 2
# of gene models 11803


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.