Info • Trichoderma crassum CBS 336.93 v1.0

Status

[January 2022] The Trichoderma crassum CBS 336.93 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 40.88
Sequencing read coverage depth 146.54x
# of contigs 352
# of scaffolds 335
# of scaffolds >= 2Kbp 268
Scaffold N50 17
Scaffold L50 (Mbp) 0.86
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.99, 1.96, 1.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42526 40571 95.4%
Ests est.fasta 166748491 165681840 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2001 1719
transcript 1834 1567
exon 638 399
intron 91 67
description:
protein length (aa) 494 401
exons per gene 2.87 2
# of gene models 12814


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.