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Info • Trichoderma cremeoides CBS 131486 v1.0

Status

[December 2021] The Trichoderma cremeoides CBS131486 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 37.51
Sequencing read coverage depth 151.75
# of contigs 298
# of scaffolds 280
# of scaffolds >= 2Kbp 210
Scaffold N50 25
Scaffold L50 (Mbp) 0.48
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.89, 1.48, 1.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42984 42197 98.2%
Ests est.fasta 184348896 183084216 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2002 1742
transcript 1832 1583
exon 639 406
intron 93 69
description:
protein length (aa) 484 396
exons per gene 2.87 2
# of gene models 12005


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.