Info • Trichoderma effusum TUCIM 254 v1.0

Status

[November 2019] The Trichoderma effusum TUCIM 254 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma effusum TUCIM 254 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.73
Sequencing read coverage depth 138.255x
# of contigs 140
# of scaffolds 127
# of scaffolds >= 2Kbp 117
Scaffold N50 14
Scaffold L50 (Mbp) 0.79
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.47, 1.93, 1.68


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29623 28535 96.3%
Ests est.fasta 190521404 189407017 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1957 1693
transcript 1788 1531
exon 645 413
intron 97 71
description:
protein length (aa) 478 381
exons per gene 2.77 2
# of gene models 10381


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.