Info • Trichoderma eijii CBS 133190 v1.0

Status

[January 2022] The Trichoderma eijii CBS 133190 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 31.04
Sequencing read coverage depth 181.81x
# of contigs 311
# of scaffolds 283
# of scaffolds >= 2Kbp 220
Scaffold N50 31
Scaffold L50 (Mbp) 0.27
# of gaps 28
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.70, 1.21, 0.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42655 41590 97.5%
Ests est.fasta 140414318 139565065 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2021 1777
transcript 1851 1614
exon 655 422
intron 95 71
description:
protein length (aa) 480 397
exons per gene 2.83 2
# of gene models 10032


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.