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Info • Trichoderma europaeum CBS 121276 v1.0

Status

[January 2022] The Trichoderma europaeum CBS 121276 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 35.65
Sequencing read coverage depth 157.14x
# of contigs 92
# of scaffolds 81
# of scaffolds >= 2Kbp 69
Scaffold N50 9
Scaffold L50 (Mbp) 1.32
# of gaps 11
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.81, 2.61, 2.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43589 42552 97.6%
Ests est.fasta 107725347 106888299 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2026 1757
transcript 1857 1594
exon 647 405
intron 92 70
description:
protein length (aa) 492 400
exons per gene 2.87 2
# of gene models 11294


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.