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Info • Trichoderma fertile CBS 339.93 v1.0

Status

[January 2022] The Trichoderma fertile CBS 339.93 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 37.26
Sequencing read coverage depth 142.33x
# of contigs 231
# of scaffolds 217
# of scaffolds >= 2Kbp 173
Scaffold N50 22
Scaffold L50 (Mbp) 0.65
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.31, 1.22, 1.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42460 41854 98.6%
Ests est.fasta 112732627 111579177 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 2023 1739
transcript 1850 1579
exon 631 394
intron 92 69
description:
protein length (aa) 494 399
exons per gene 2.93 2
# of gene models 11976


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.