Info • Trichoderma floccosum CBS 124372 v1.0

Status

[January 2022] The Trichoderma floccosum CBS 124372 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 37.72
Sequencing read coverage depth 150.06x
# of contigs 403
# of scaffolds 384
# of scaffolds >= 2Kbp 277
Scaffold N50 17
Scaffold L50 (Mbp) 0.76
# of gaps 19
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.07, 1.50, 1.43


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43406 43006 99.1%
Ests est.fasta 189565727 188305563 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2011 1750
transcript 1847 1600
exon 645 409
intron 90 68
description:
protein length (aa) 482 395
exons per gene 2.86 2
# of gene models 11877


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.