Status
The genome sequence and gene models of Trichoderma guizhouese NJAU4742 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Sep 4, 2018. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Trichoderma guizhouense v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.33 |
| Sequencing read coverage depth | 24X |
| # of contigs | 416 |
| # of scaffolds | 63 |
| # of scaffolds >= 2Kbp | 45 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 2.41 |
| # of gaps | 353 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 3.57, 3.54, 3.16 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1677 | 1399 |
| transcript | 1512 | 1248 |
| exon | 527 | 284 |
| intron | 91 | 68 |
| description: | ||
| protein length (aa) | 504 | 416 |
| exons per gene | 2.87 | 2 |
| # of gene models | 11255 |
Collaborators
Irina S. Druzhinina - TU Wien, Vienna, Austria
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Druzhinina IS, Chenthamara K, Zhang J, Atanasova L, Yang D, Miao Y, Rahimi MJ, Grujic M, Cai F, Pourmehdi S, Salim KA, Pretzer C, Kopchinskiy AG, Henrissat B, Kuo A, Hundley H, Wang M, Aerts A, Salamov A, Lipzen A, LaButti K, Barry K, Grigoriev IV, Shen Q, Kubicek CP
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
PLoS Genet. 2018 Apr;14(4):e1007322. doi: 10.1371/journal.pgen.1007322
Druzhinina IS, Chenthamara K, Zhang J, Atanasova L, Yang D, Miao Y, Rahimi MJ, Grujic M, Cai F, Pourmehdi S, Salim KA, Pretzer C, Kopchinskiy AG, Henrissat B, Kuo A, Hundley H, Wang M, Aerts A, Salamov A, Lipzen A, LaButti K, Barry K, Grigoriev IV, Shen Q, Kubicek CP
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
PLoS Genet. 2018 Apr;14(4):e1007322. doi: 10.1371/journal.pgen.1007322
Funding
This project was not sequenced at the JGI.
