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Info • Trichoderma guizhouense NJAU 4742

Status

The genome sequence and gene models of Trichoderma guizhouese NJAU4742 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Sep 4, 2018. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Trichoderma guizhouense v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.33
Sequencing read coverage depth 24X
# of contigs 416
# of scaffolds 63
# of scaffolds >= 2Kbp 45
Scaffold N50 7
Scaffold L50 (Mbp) 2.41
# of gaps 353
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 3.57, 3.54, 3.16


Gene Models ExternalModels
length (bp) of: average median
gene 1677 1399
transcript 1512 1248
exon 527 284
intron 91 68
description:
protein length (aa) 504 416
exons per gene 2.87 2
# of gene models 11255


Collaborators

Irina S. Druzhinina - TU Wien, Vienna, Austria

Genome Reference(s)

Funding

This project was not sequenced at the JGI.