Status
v1.0: This draft assembly was produced using Illumina data (2x150 270bp, 2x100 4kb CLIP) and assembled using the AllPathsLG assembler.
Summary statistics for the Trichoderma harzianum CBS
226.95 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 40.98 |
| Sequencing read coverage depth | 120x |
| # of contigs | 576 |
| # of scaffolds | 532 |
| # of scaffolds >= 2Kbp | 403 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 2.41 |
| # of gaps | 44 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 4.09, 3.93, 3.24 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | RNAseq_assemblies | 31594 | 29511 | 93.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1628 | 1355 |
| transcript | 1467 | 1210 |
| exon | 543 | 326 |
| intron | 96 | 68 |
| description: | ||
| protein length (aa) | 441 | 355 |
| exons per gene | 2.70 | 2 |
| # of gene models | 14095 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Druzhinina IS, Chenthamara K, Zhang J, Atanasova L, Yang D, Miao Y, Rahimi MJ, Grujic M, Cai F, Pourmehdi S, Salim KA, Pretzer C, Kopchinskiy AG, Henrissat B, Kuo A, Hundley H, Wang M, Aerts A, Salamov A, Lipzen A, LaButti K, Barry K, Grigoriev IV, Shen Q, Kubicek CP
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
PLoS Genet. 2018 Apr;14(4):e1007322. doi: 10.1371/journal.pgen.1007322
Druzhinina IS, Chenthamara K, Zhang J, Atanasova L, Yang D, Miao Y, Rahimi MJ, Grujic M, Cai F, Pourmehdi S, Salim KA, Pretzer C, Kopchinskiy AG, Henrissat B, Kuo A, Hundley H, Wang M, Aerts A, Salamov A, Lipzen A, LaButti K, Barry K, Grigoriev IV, Shen Q, Kubicek CP
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
PLoS Genet. 2018 Apr;14(4):e1007322. doi: 10.1371/journal.pgen.1007322
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
