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Info • Trichoderma harzianum CBS 226.95 v1.0

Status

v1.0: This draft assembly was produced using Illumina data (2x150 270bp, 2x100 4kb CLIP) and assembled using the AllPathsLG assembler.

Summary statistics for the Trichoderma harzianum CBS 226.95 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 40.98
Sequencing read coverage depth 120x
# of contigs 576
# of scaffolds 532
# of scaffolds >= 2Kbp 403
Scaffold N50 7
Scaffold L50 (Mbp) 2.41
# of gaps 44
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 4.09, 3.93, 3.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other RNAseq_assemblies 31594 29511 93.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1628 1355
transcript 1467 1210
exon 543 326
intron 96 68
description:
protein length (aa) 441 355
exons per gene 2.70 2
# of gene models 14095


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.