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Info • Trichoderma hamatum GD12

Status

The genome sequence and gene models of Trichoderma hamatum GD12 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Dec 4, 2018 and annotation provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Trichoderma hamatum GD12 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.43
Sequencing read coverage depth 40x
# of contigs 820
# of scaffolds 745
# of scaffolds >= 2Kbp 637
Scaffold N50 64
Scaffold L50 (Mbp) 0.18
# of gaps 75
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.68, 0.59, 0.58


Gene Models ExternalModels
length (bp) of: average median
gene 1727 1435
transcript 1550 1275
exon 557 306
intron 101 69
description:
protein length (aa) 516 424
exons per gene 2.78 2
# of gene models 10520


Genome Reference(s)

Funding

This project was not sequenced at the JGI.