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Info • Trichoderma harzianum M10 v1.0

Status

[October 2018] The Trichoderma harzianum M10 genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma harzianum M10 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.48
Sequencing read coverage depth 116.3x
# of contigs 327
# of scaffolds 304
# of scaffolds >= 2Kbp 262
Scaffold N50 28
Scaffold L50 (Mbp) 0.44
# of gaps 23
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.47, 1.18, 0.99


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35334 32717 92.6%
Ests est.fasta 141216670 139821703 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1856 1586
transcript 1689 1435
exon 587 363
intron 91 68
description:
protein length (aa) 485 396
exons per gene 2.88 2
# of gene models 12842


Collaborators

Mateo Lorito - Università di Napoli Federico II

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.