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Info • Trichoderma harzianum T22 v1.0

Status

[October 2018] The Trichoderma harzianum T22 genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma harzianum T22 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.38
Sequencing read coverage depth 129.362687561x
# of contigs 506
# of scaffolds 478
# of scaffolds >= 2Kbp 446
Scaffold N50 68
Scaffold L50 (Mbp) 0.18
# of gaps 28
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.76, 0.54, 0.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43978 38707 88.0%
Ests est.fasta 253243772 250835631 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1838 1574
transcript 1671 1418
exon 582 359
intron 91 68
description:
protein length (aa) 477 388
exons per gene 2.87 2
# of gene models 12762


Collaborators

Mateo Lorito - Università di Napoli Federico II

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.