Status
Assembly v1 (September 2012) is a draft assembly of Solexa gDNA reads using AllPathsLG.
Summary statistics for the Trichoderma longibrachiatum
ATCC 18648 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 32.24 |
| Sequencing read coverage depth | 104.2x |
| # of contigs | 1608 |
| # of scaffolds | 130 |
| # of scaffolds >= 2Kbp | 92 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 1.61 |
| # of gaps | 1478 |
| % of scaffold length in gaps | 3.7% |
| Three largest Scaffolds (Mbp) | 3.30, 2.90, 2.67 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | NCBI_Sanger_ESTs | 1799 | 33 | 1.8% |
| Other | JGI_Combest_RNA_contigs | 79286 | 79021 | 99.7% |
| Other | JGI_Rnnotator_RNA_contigs | 28133 | 25452 | 90.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1679 | 1394 |
| transcript | 1483 | 1210 |
| exon | 563 | 358 |
| intron | 122 | 72 |
| description: | ||
| protein length (aa) | 424 | 333 |
| exons per gene | 2.63 | 2 |
| # of gene models | 10792 |
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
