Info • Trichoderma novae-zelandiae CBS 472.97 v1.0

Status

[June 2021] The Trichoderma novae-zelandiae CBS 472.97 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 34.59
Sequencing read coverage depth 141.716052696x
# of contigs 145
# of scaffolds 132
# of scaffolds >= 2Kbp 121
Scaffold N50 11
Scaffold L50 (Mbp) 1.02
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.87, 2.58, 2.18


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49030 48383 98.7%
Ests est.fasta 309968353 308147555 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2018 1747
transcript 1843 1584
exon 663 426
intron 100 73
description:
protein length (aa) 473 380
exons per gene 2.78 2
# of gene models 10376


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.