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Info • Trichosporon oleaginosus IBC0246 v1.0

Status

May 2014. The genome of Trichosporon oleaginosus was sequenced using Illumina technology and subsequently assembled together with AllPathsLG version R47710, (Gnerre et al., 2010).

Summary statistics for the Trichosporon oleaginosus IBC0246 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.84
Sequencing read coverage depth 115.8x
# of contigs 196
# of scaffolds 180
# of scaffolds >= 2Kbp 174
Scaffold N50 29
Scaffold L50 (Mbp) 0.22
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.65, 0.62, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 21147 20402 96.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1749 1500
transcript 1557 1309
exon 418 238
intron 73 41
description:
protein length (aa) 453 367
exons per gene 3.72 3
# of gene models 8322


Collaborators

  • Minou Nowrousian - Ruhr-Universität Bochum, Germany
  • Joey Spatafora - Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.