Status
[November 2018] The genome sequence and gene models of Trichoderma parareesei CBS 125925 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Sep 18, 2018. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Trichoderma parareesei CBS
125925 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.07 |
| Sequencing read coverage depth | 250.5X |
| # of contigs | 3678 |
| # of scaffolds | 885 |
| # of scaffolds >= 2Kbp | 819 |
| Scaffold N50 | 149 |
| Scaffold L50 (Mbp) | 0.07 |
| # of gaps | 2793 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 0.29, 0.28, 0.20 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1661 | 1398 |
| transcript | 1500 | 1245 |
| exon | 553 | 296 |
| intron | 96 | 73 |
| description: | ||
| protein length (aa) | 500 | 415 |
| exons per gene | 2.72 | 2 |
| # of gene models | 9062 |
Collaborators
Irina S. Druzhinina - TU Wien, Vienna, Austria
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Yang D, Pomraning K, Kopchinskiy A, Karimi Aghcheh R, Atanasova L, Chenthamara K, Baker SE, Zhang R, Shen Q, Freitag M, Kubicek CP, Druzhinina IS
Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei.
Genome Announc. 2015 Aug 13;3(4):. doi: 10.1128/genomeA.00885-15
Yang D, Pomraning K, Kopchinskiy A, Karimi Aghcheh R, Atanasova L, Chenthamara K, Baker SE, Zhang R, Shen Q, Freitag M, Kubicek CP, Druzhinina IS
Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei.
Genome Announc. 2015 Aug 13;3(4):. doi: 10.1128/genomeA.00885-15
Funding
This project was not sequenced at the JGI.
