Status
[October 2024] The Trichoderma paraviridescens ED13 (OSU S. gigantem needle) v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. Originally processed as a metagenome, no contaminants were identified so the mitochondrial genome could be directly associated with the nuclear assembly and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 37.44 |
| Sequencing read coverage depth | 532.71x |
| # of contigs | 9 |
| # of scaffolds | 9 |
| # of scaffolds >= 2Kbp | 9 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 5.60 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 7.59, 7.24, 5.60 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1823 | 1467 |
| transcript | 1591 | 1293 |
| exon | 511 | 272 |
| intron | 112 | 69 |
| description: | ||
| protein length (aa) | 530 | 431 |
| exons per gene | 3.11 | 3 |
| # of gene models | 10470 |
Collaborators
- Amy Honan, Oregon State University, Corvallis, OR
- Ethan Disbrow, Oregon State University, Corvallis, OR
Links
- JGI Myco-Ed homepage
- JGI Myco-Ed Genome Group Portal
- JGI Ecogroup Portal: Endophytic_fungi
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Trichoderma
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
