Info • Tricharina praecox CBS 144465 v1.0

Status

[March 2018] The Tricharina praecox CBS 144465 (DOB2270) genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Tricharina praecox v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.36
Sequencing read coverage depth 54.25x
# of contigs 104
# of scaffolds 104
# of scaffolds >= 2Kbp 100
Scaffold N50 12
Scaffold L50 (Mbp) 1.01
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.20, 2.50, 1.89


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44340 39982 90.2%
Ests est.fasta 126889804 122391230 96.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1744 1493
transcript 1548 1302
exon 470 303
intron 87 64
description:
protein length (aa) 428 339
exons per gene 3.29 3
# of gene models 10413


Collaborators

  • Tom Bruns at University of California Berkeley

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Steindorff AS, Seong K, Carver A, Calhoun S, Fischer MS, Stillman K, Liu H, Drula E, Henrissat B, Simpson HJ, Schilling JS, Lipzen A, He G, Yan M, Andreopoulos B, Pangilinan J, LaButti K, Ng V, Traxler M, Bruns TD, Grigoriev IV
Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development.
New Phytol. 2022 Jul 27;():. doi: 10.1111/nph.18407

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.