Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Trichoderma reesei RUT C-30 v1.0

Status

v1.0: This draft release was produced using Illumina data (2x150 200bp, 2x76 3kb, 2x76 16kb) and assembled using the AllPathsLG assembler.

 

Summary statistics for the Trichoderma reesei RUT C-30 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 32.69
Sequencing read coverage depth 47.6
# of contigs 320
# of scaffolds 182
# of scaffolds >= 2Kbp 96
Scaffold N50 10
Scaffold L50 (Mbp) 1.02
# of gaps 138
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 3.60, 2.52, 1.89


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 42916 30887 72.0%
Other GenBankGenes 69 67 97.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1696 1418
transcript 1476 1230
exon 512 290
intron 119 76
description:
protein length (aa) 469 386
exons per gene 2.88 3
# of gene models 9852


Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.