Status
The genome sequence and gene models of Trichoderma reesei QM6a were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Mar 25, 2019 and annotation provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Trichoderma reesei QM6a v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.92 |
| Sequencing read coverage depth | 81.4 |
| # of contigs | 7 |
| # of scaffolds | 7 |
| # of scaffolds >= 2Kbp | 7 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 5.31 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.84, 6.23, 5.31 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1624 | 1357 |
| transcript | 1422 | 1182 |
| exon | 495 | 273 |
| intron | 110 | 76 |
| description: | ||
| protein length (aa) | 474 | 394 |
| exons per gene | 2.87 | 3 |
| # of gene models | 10052 |
Collaborators
Ting-Fang Wang - Academia Sinica - Taiwan
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Li WC, Huang CH, Chen CL, Chuang YC, Tung SY, Wang TF
Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters.
Biotechnol Biofuels. 2017;10():170. doi: 10.1186/s13068-017-0825-x
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
Nat Biotechnol. 2008 May;26(5):553-60. doi: 10.1038/nbt1403
Li WC, Huang CH, Chen CL, Chuang YC, Tung SY, Wang TF
Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters.
Biotechnol Biofuels. 2017;10():170. doi: 10.1186/s13068-017-0825-x
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
Nat Biotechnol. 2008 May;26(5):553-60. doi: 10.1038/nbt1403
Links
JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreales Trichoderma
Funding
This project was not sequenced at the JGI.
