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Info • Trichoderma velutinum TUCIM 2924 v1.0

Status

[December 2019] The Trichoderma velutinum TUCIM 2924 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma velutinum TUCIM 2924 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.31
Sequencing read coverage depth 115.494752895x
# of contigs 167
# of scaffolds 147
# of scaffolds >= 2Kbp 125
Scaffold N50 7
Scaffold L50 (Mbp) 2.30
# of gaps 20
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.31, 3.40, 3.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42460 40393 95.1%
Ests est.fasta 194802409 193709837 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1944 1701
transcript 1782 1555
exon 623 392
intron 89 67
description:
protein length (aa) 479 392
exons per gene 2.86 2
# of gene models 13295


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.