Info • Trichoderma sp. aff breve SZMC 28012 v1.0

Status

[June 2021] The Trichoderma sp. aff breve SZMC 28012 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 39.81
Sequencing read coverage depth 99.8778598871x
# of contigs 180
# of scaffolds 164
# of scaffolds >= 2Kbp 124
Scaffold N50 8
Scaffold L50 (Mbp) 2.08
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.50, 3.20, 2.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45841 45496 99.2%
Ests est.fasta 194000779 192670597 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1974 1702
transcript 1813 1555
exon 640 405
intron 89 67
description:
protein length (aa) 482 392
exons per gene 2.83 2
# of gene models 13010


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.