Info • Truncatella angustata MPI-SDFR-AT-0073 v1.0

Status

[July 2017] The Truncatella angustata MPI-SDFR-AT-0073 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Truncatella angustata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.10
Sequencing read coverage depth 68.92x
# of contigs 17
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 4
Scaffold L50 (Mbp) 3.95
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.27, 8.08, 4.00


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52502 51386 97.9%
Ests est.fasta 121430513 118619099 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1692 1467
transcript 1543 1327
exon 568 347
intron 89 62
description:
protein length (aa) 452 375
exons per gene 2.71 2
# of gene models 14777


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.