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Info • Viridothelium virens v1.0


Assembly v1 (April 2013) is a minimal draft assembly of Solexa unpaired-end gDNA reads which were assembled first using Velvet to simulate paired end reads. A total of 730 scaffolds and 32.2 Mbp were assembled from those reads and contigs using AllPathsLG.

Summary statistics for the Viridothelium virens v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 32.16
Sequencing read coverage depth 142.1x
# of contigs 747
# of scaffolds 730
# of scaffolds >= 2Kbp 460
Scaffold N50 32
Scaffold L50 (Mbp) 0.32
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.03, 1.00, 0.87

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 42452 39835 93.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1722 1490
transcript 1574 1338
exon 556 332
intron 83 60
protein length (aa) 458 377
exons per gene 2.83 2
# of gene models 11858

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.