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Info • Tuber aestivum var. urcinatum v1.0

Status

The genome sequence and gene prediction of Tuber aestivum were not determined by the JGI. The genome sequence and gene prediction were originally done by Genoscope and were delivered to JGI by Emmanuelle Morin and Claude Murat at INRA. Please note that this copy of the genome is not maintained by Genoscope or INRA and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to Genoscope and INRA's scaffolds and gene models.

Summary statistics for the Tuber aestivum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 144.72
Sequencing read coverage depth ??
# of contigs 7613
# of scaffolds 3244
# of scaffolds >= 2Kbp 3242
Scaffold N50 102
Scaffold L50 (Mbp) 0.44
# of gaps 4369
% of scaffold length in gaps 9.1%
Three largest Scaffolds (Mbp) 1.95, 1.86, 1.69


Gene Models INRA_gene_models
length (bp) of: average median
gene 2206 1839
transcript 1931 1634
exon 507 316
intron 100 64
description:
protein length (aa) 455 362
exons per gene 3.81 3
# of gene models 9344


Genome Reference(s)

Funding

This project was not sequenced at the JGI.