Info • Tuber brumale v1.0


[June 2020] The genome sequence of Tuber brumale was not determined by the JGI.


The genome sequence was assembled with ALLPATHS-LG by Claude Murat (INRA Nancy - France).

The genome was provided by INRA on October 2016. The annotation was done by Emmanuelle Morin of INRA using the JGI Annotation Pipeline.

This copy of the genome include the mitochondrial chromosome or genes.

Summary statistics for the Tuber brumale v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 171.44
Sequencing read coverage depth 130x
# of contigs 6649
# of scaffolds 1475
# of scaffolds >= 2Kbp 1315
Scaffold N50 160
Scaffold L50 (Mbp) 0.34
# of gaps 5174
% of scaffold length in gaps 6.4%
Three largest Scaffolds (Mbp) 1.32, 1.14, 1.09

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 257542399 253789334 98.5%
Other Tubbr1_RNA_contigs 54621 47278 86.6%

Gene Models FilteredModels1
length (bp) of: average median
gene 1546 1269
transcript 1338 1068
exon 396 248
intron 89 65
protein length (aa) 381 285
exons per gene 3.38 3
# of gene models 12382

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.