Info • Tuber gibbosum GB_Tgibb2 v1.0

Status

[April 2020] The genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Tuber gibbosum GB_Tgibb2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 73.83
Sequencing read coverage depth 814.89x
# of contigs 1940
# of scaffolds 1940
# of scaffolds >= 2Kbp 1672
Scaffold N50 176
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.63, 0.54, 0.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83045 75132 90.5%
Ests est.fasta 150123892 146719533 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1642 1382
transcript 1436 1184
exon 417 260
intron 86 64
description:
protein length (aa) 410 314
exons per gene 3.44 3
# of gene models 10490


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.