Status
The genome sequence of Tuber magnatum was not determined by the JGI. The genome sequence was provided by INRA and annotated by Emmanuelle Morin using the JGI Annotation Pipeline. This copy of the genome does not include the mitochondrial chromosome or genes.
Summary statistics for the Tuber magnatum v1.0 release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 192.78 |
| Sequencing read coverage depth | ?x |
| # of contigs | 7876 |
| # of scaffolds | 1283 |
| # of scaffolds >= 2Kbp | 656 |
| Scaffold N50 | 36 |
| Scaffold L50 (Mbp) | 1.81 |
| # of gaps | 6593 |
| % of scaffold length in gaps | 14.4% |
| Three largest Scaffolds (Mbp) | 4.86, 4.24, 4.16 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | INRA_454_cDNAs | 1173193 | 795687 | 67.8% |
| Other | INRA_454_contigs | 28782 | 24218 | 84.1% |
| Gene Models | FilteredModels3 | |
| length (bp) of: | average | median |
| gene | 1614 | 1354 |
| transcript | 1359 | 1117 |
| exon | 363 | 226 |
| intron | 95 | 66 |
| description: | ||
| protein length (aa) | 407 | 322 |
| exons per gene | 3.74 | 3 |
| # of gene models | 9433 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, Žifčáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, Žifčáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4
Funding
This project was not sequenced at the JGI.
