Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Tuber melanosporum Mel28 v1.0
Please note that this organism is for archival use only. Please see the current Tuber melanosporum Mel28 v1.2 site for the latest data and information.

Status

The genome sequence and gene prediction of Tuber melanosporum were not determined by the JGI. The genome sequence was downloaded from Genoscope's Tuber Genome Browser on September 21 2011. The gene prediction was originally done by Genoscope but was delivered to JGI by Emmanuelle Morin at INRA. Please note that this copy of the genome is not maintained by Genoscope or INRA and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to Genoscope and INRA's scaffolds and gene models.

Summary statistics for the Tuber melanosporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 124.95
Sequencing read coverage depth 1
# of contigs 7682
# of scaffolds 398
# of scaffolds >= 2Kbp 398
Scaffold N50 60
Scaffold L50 (Mbp) 0.64
# of gaps 3642
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 2.79, 2.23, 2.17


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests INRA_454_ESTs 166614 63434 38.1%
Ests NCBI_ESTs 92371 82366 89.2%


Gene Models Genoscope_genes
length (bp) of: average median
gene 2073 1739
transcript 1316 1080
exon 340 192
intron 110 65
description:
protein length (aa) 439 360
exons per gene 3.87 3
# of gene models 7496


Genome Reference(s)

Funding

This project was not sequenced at the JGI.