Status
The genome sequence and gene prediction of Tuber melanosporum were not determined by the JGI. The genome sequence was downloaded from Genoscope's Tuber Genome Browser on September 21 2011. The gene prediction was originally done by Genoscope but was delivered to JGI by Emmanuelle Morin at INRA. Please note that this copy of the genome is not maintained by Genoscope or INRA and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to Genoscope and INRA's scaffolds and gene models.
Summary statistics for the Tuber melanosporum v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 124.95 |
| Sequencing read coverage depth | 1 |
| # of contigs | 7682 |
| # of scaffolds | 398 |
| # of scaffolds >= 2Kbp | 398 |
| Scaffold N50 | 60 |
| Scaffold L50 (Mbp) | 0.64 |
| # of gaps | 3642 |
| % of scaffold length in gaps | 1.1% |
| Three largest Scaffolds (Mbp) | 2.79, 2.23, 2.17 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | INRA_454_ESTs | 166614 | 63434 | 38.1% |
| Ests | NCBI_ESTs | 92371 | 82366 | 89.2% |
| Gene Models | Genoscope_genes | |
| length (bp) of: | average | median |
| gene | 2073 | 1739 |
| transcript | 1316 | 1080 |
| exon | 340 | 192 |
| intron | 110 | 65 |
| description: | ||
| protein length (aa) | 439 | 360 |
| exons per gene | 3.87 | 3 |
| # of gene models | 7496 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, Montanini B, Morin E, Noel B, Percudani R, Porcel B, Rubini A, Amicucci A, Amselem J, Anthouard V, Arcioni S, Artiguenave F, Aury JM, Ballario P, Bolchi A, Brenna A, Brun A, Buée M, Cantarel B, Chevalier G, Couloux A, Da Silva C, Denoeud F, Duplessis S, Ghignone S, Hilselberger B, Iotti M, Marçais B, Mello A, Miranda M, Pacioni G, Quesneville H, Riccioni C, Ruotolo R, Splivallo R, Stocchi V, Tisserant E, Viscomi AR, Zambonelli A, Zampieri E, Henrissat B, Lebrun MH, Paolocci F, Bonfante P, Ottonello S, Wincker P
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis.
Nature. 2010 Apr 15;464(7291):1033-8. doi: 10.1038/nature08867
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, Montanini B, Morin E, Noel B, Percudani R, Porcel B, Rubini A, Amicucci A, Amselem J, Anthouard V, Arcioni S, Artiguenave F, Aury JM, Ballario P, Bolchi A, Brenna A, Brun A, Buée M, Cantarel B, Chevalier G, Couloux A, Da Silva C, Denoeud F, Duplessis S, Ghignone S, Hilselberger B, Iotti M, Marçais B, Mello A, Miranda M, Pacioni G, Quesneville H, Riccioni C, Ruotolo R, Splivallo R, Stocchi V, Tisserant E, Viscomi AR, Zambonelli A, Zampieri E, Henrissat B, Lebrun MH, Paolocci F, Bonfante P, Ottonello S, Wincker P
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis.
Nature. 2010 Apr 15;464(7291):1033-8. doi: 10.1038/nature08867
Links
- Tuber Genome Browser at Genoscope
- TuberDB at INRA
- JGI Oidiodendron maius v1.0 Portal at JGI
- JGI Laccaria bicolor v2.0 Portal at JGI
- JGI Hebeloma cylindrosporum v1.0 Portal at JGI
- JGI Paxillus involutus v1.0 Portal at JGI
Funding
This project was not sequenced at the JGI.
