Status
[October 2020] The genome was sequenced
with PacBio, assembled with Falcon, and annotated with the JGI
Annotation Pipeline. The transcriptome was sequenced with Illumina
and assembled with Trinity.
Summary statistics for the Tuber mesentericum Tmes4 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 146.23 |
| Sequencing read coverage depth | 185.82x |
| # of contigs | 811 |
| # of scaffolds | 811 |
| # of scaffolds >= 2Kbp | 811 |
| Scaffold N50 | 74 |
| Scaffold L50 (Mbp) | 0.61 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.38, 1.73, 1.63 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 188362068 | 185766294 | 98.6% |
| Other | JGI_RNA_contigs | 151810 | 119950 | 79.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1580 | 1302 |
| transcript | 1341 | 1074 |
| exon | 393 | 237 |
| intron | 101 | 66 |
| description: | ||
| protein length (aa) | 387 | 285 |
| exons per gene | 3.41 | 3 |
| # of gene models | 14712 |
Collaborators
Links
- 1000 Fungal Genomes Project
- JGI EcoGroup Portal: Mycorrhizal fungi
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes Pezizales Tuber
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
