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Info • Tulasnella calospora AL13/4D v1.0

Status

Assembly v1 (June 2012) is a draft assembly of Solexa gDNA reads. A total of 1335 scaffolds and 62.4 Mbp were assembled using AllPathsLG.

Summary statistics for the Tulasnella calospora AL13/4D v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 62.39
Sequencing read coverage depth 136x
# of contigs 6848
# of scaffolds 1335
# of scaffolds >= 2Kbp 1124
Scaffold N50 113
Scaffold L50 (Mbp) 0.16
# of gaps 5513
% of scaffold length in gaps 16.6%
Three largest Scaffolds (Mbp) 0.93, 0.59, 0.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests UNITO_mycelium_454_ESTs 217049 30700 14.1%
Ests UNITO_protocorm_454_ESTs 89934 57543 64.0%
Other JGI_Combest_RNA_contigs 85020 74964 88.2%
Other JGI_Rnnotator_RNA_contigs 36514 27745 76.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1461 1132
transcript 1109 882
exon 239 155
intron 98 64
description:
protein length (aa) 341 263
exons per gene 4.65 4
# of gene models 19659


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.